Tim Rattay had the most passing yards in 1999, with 3,922 yards.

	NAME	YDS	SEASON	TM	GP	CMP	ATT	PCT	AVG	YDS/G	TD	INT	RTG	TD%	INT%
1	Tim Rattay T. Rattay	3,922	1999	LT	10	342	516	66.3	7.6	392.2	35	12	147.9	6.8	2.3
2	Dan Robinson D. Robinson	3,853	1999	HAW	12	288	556	51.8	6.9	321.1	28	18	120.2	5.0	3.2
3	Chad Pennington C. Pennington	3,799	1999	MRSH	12	275	405	67.9	9.4	316.6	37	11	171.4	9.1	2.7
4	Chris Redman C. Redman	3,647	1999	LOU	11	317	489	64.8	7.5	331.5	29	13	141.7	5.9	2.7
5	Tim Lester T. Lester	3,639	1999	WMU	12	282	470	60.0	7.7	303.3	34	13	143.4	7.2	2.8
6	Kevin Feterik K. Feterik	3,554	1999	BYU	11	277	452	61.3	7.9	323.1	25	15	138.9	5.5	3.3
7	Drew Brees D. Brees	3,531	1999	PUR	11	301	494	60.9	7.1	321.0	21	11	130.5	4.3	2.2
8	Josh Heupel J. Heupel	3,460	1999	OKLA	11	310	500	62.0	6.9	314.5	30	15	133.9	6.0	3.0
9	Patrick Ramsey P. Ramsey	3,410	1999	TULN	11	310	513	60.4	6.6	310.0	25	24	123.0	4.9	4.7
10	David Neill D. Neill	3,402	1999	NEV	11	247	423	58.4	8.0	309.3	20	7	138.2	4.7	1.7
11	Major Applewhite M. Applewhite	3,357	1999	TEX	13	271	467	58.0	7.2	258.2	21	9	129.4	4.5	1.9
12	Dusty Bonner D. Bonner	3,266	1999	UK	11	303	465	65.2	7.0	296.9	26	13	137.0	5.6	2.8
13	Chris Weinke C. Weinke	3,103	1999	FSU	11	232	377	61.5	8.2	282.1	25	14	145.1	6.6	3.7
14	Vic Penn V. Penn	3,078	1999	UCF	11	262	455	57.6	6.8	279.8	16	11	121.2	3.5	2.4
15	Joe Hamilton J. Hamilton	3,060	1999	GT	11	203	305	66.6	10.0	278.2	29	11	175.0	9.5	3.6
16	Jonathan Smith J. Smith	2,784	1999	ORST	11	188	385	48.8	7.2	253.1	15	7	118.8	3.9	1.8
17	Jarious Jackson J. Jackson	2,753	1999	ND	12	184	316	58.2	8.7	229.4	17	14	140.3	5.4	4.4
18	Bart Hendricks B. Hendricks	2,746	1999	BSU	12	203	351	57.8	7.8	228.8	22	13	136.8	6.3	3.7
19	Quincy Carter Q. Carter	2,713	1999	UGA	11	216	380	56.8	7.1	246.6	17	6	128.4	4.5	1.6
20	Mike Moschetti M. Moschetti	2,693	1999	COLO	10	204	331	61.6	8.1	269.3	18	12	140.7	5.4	3.6
21	Todd Husak T. Husak	2,688	1999	STAN	10	176	308	57.1	8.7	268.8	18	11	142.6	5.8	3.6
22	Wes Counts W. Counts	2,603	1999	MTSU	11	249	390	63.8	6.7	236.6	14	13	125.1	3.6	3.3
23	Doug Johnson D. Johnson	2,574	1999	FLA	11	190	337	56.4	7.6	234.0	20	13	132.4	5.9	3.9
24	Billy Volek B. Volek	2,559	1999	FRES	12	235	355	66.2	7.2	213.3	30	3	152.9	8.5	0.8
25	Mike Bath M. Bath	2,525	1999	M-OH	11	138	295	46.8	8.6	229.5	24	13	136.7	8.1	4.4