Between the 1999 and 2001 seasons, Kurt Warner had the most passing touchdowns, with 98 touchdowns.

who led the league in passing touchdowns from 1999 to 2001
WarnerManningGannonFavreGarciaGrbacGrieseBeuerleinMcNabbBrunellKitnaCollinsJohnsonMcNairCulpepperChandlerFlutiePlummerCouchBatchBledsoeTestaverdeFiedler9885797474655655545353494848474242403938383736
NAMEGPTDCMPATTPCTYDSAVGYDS/GTD%INTINT%SCKSCKYRATE
Kurt WarnerKurt Warner43989351,39267.212,6129.1293.37.0533.887549103.4
Peyton ManningPeyton Manning48851,0311,65162.412,6797.7264.15.1533.26347989.9
Rich GannonRich Gannon48799491,53761.711,0987.2231.25.1342.210452091.5
Brett FavreBrett Favre48749931,68558.911,8247.0246.34.4543.29061081.7
Jeff GarciaJeff Garcia45748961,44062.210,3607.2230.25.1332.36537391.5
Elvis GrbacElvis Grbac45658851,51358.510,5917.0235.44.3473.18359881.4
Brian GrieseBrian Griese39567521,23960.78,5476.9219.24.5373.08255684.0
Steve BeuerleinSteve Beuerlein32556671,10460.48,1667.4255.25.0333.011261187.4
Donovan McNabbDonovan McNabb44547211,27856.47,5465.9171.54.2322.511273977.4
Mark BrunellMark Brunell46538591,42660.210,0097.0217.63.7362.514085083.4
Jon KitnaJon Kitna46538421,49456.49,2206.2200.43.5573.89054970.7
Kerry CollinsKerry Collins42498281,42858.09,6926.8230.83.4402.88056178.4
Brad JohnsonBrad Johnson44488841,44361.39,9166.9225.43.3392.79359681.6
Steve McNairSteve McNair42486991,15860.48,3767.2199.44.1332.87746684.5
Daunte CulpepperDaunte Culpepper284753284063.36,5497.8233.95.6293.56736791.6
Chris ChandlerChris Chandler40425891,00358.77,4227.4185.64.2373.711374280.4
Doug FlutieDoug Flutie42426901,23056.18,3356.8198.53.4373.06141275.9
Jake PlummerJake Plummer42407751,38156.18,7106.3207.42.9594.37850767.0
Tim CouchTim Couch38396321,06859.26,9706.5183.43.7434.011779074.0
Charlie BatchCharlie Batch36385701,02355.76,8386.7189.93.7343.311060474.9
Drew BledsoeDrew Bledsoe34386571,13657.87,6766.8225.83.3363.210562776.4
Vinny TestaverdeVinny Testaverde33375981,04657.26,5806.3199.43.5403.83119371.8
Jay FiedlerJay Fiedler383653890159.76,3487.0167.14.0353.95735478.3
Aaron BrooksAaron Brooks243542575256.55,3467.1222.84.7283.76542478.8
Tony BanksTony Banks383551796453.66,1006.3160.53.6262.78251574.0
StatMuse has season-level data for passing touchdowns going back to the 1921 season.

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