Since 2000, Jeff Garcia has the most passing touchdowns for the 49ers in a season, with 32 touchdowns in 2001.
| NAME | TD | SEASON | TM | GP | CMP | ATT | PCT | YDS | AVG | YDS/G | INT | RTG | TD% | INT% | SCK | SCKY | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  | J. Garcia | 32 | 2001 | 16 | 316 | 504 | 62.7 | 3,538 | 7.0 | 221.1 | 12 | 94.8 | 6.3 | 2.4 | 26 | 114 | |
| 2 |  | B. Purdy | 31 | 2023 | 16 | 308 | 444 | 69.4 | 4,280 | 9.6 | 267.5 | 11 | 113.0 | 7.0 | 2.5 | 28 | 153 | |
| 3 | | J. Garcia | 31 | 2000 | 16 | 355 | 561 | 63.3 | 4,278 | 7.6 | 267.4 | 10 | 97.6 | 5.5 | 1.8 | 24 | 155 | |
| 4 |  | J. Garoppolo | 27 | 2019 | 16 | 329 | 476 | 69.1 | 3,978 | 8.4 | 248.6 | 13 | 102.0 | 5.7 | 2.7 | 36 | 237 | |
| 5 |  | C. Kaepernick | 21 | 2013 | 16 | 243 | 416 | 58.4 | 3,197 | 7.7 | 199.8 | 8 | 91.6 | 5.0 | 1.9 | 39 | 231 | |
| 6 | | J. Garcia | 21 | 2002 | 16 | 328 | 528 | 62.1 | 3,344 | 6.3 | 209.0 | 10 | 85.6 | 4.0 | 1.9 | 17 | 93 | |
| 7 | | B. Purdy | 20 | 2025 | 9 | 197 | 284 | 69.4 | 2,167 | 7.6 | 240.8 | 10 | 100.5 | 7.0 | 3.5 | 11 | 53 | |
| 8 | | B. Purdy | 20 | 2024 | 15 | 300 | 455 | 65.9 | 3,864 | 8.5 | 257.6 | 12 | 96.1 | 4.4 | 2.6 | 31 | 156 | |
| 9 | | J. Garoppolo | 20 | 2021 | 15 | 301 | 441 | 68.3 | 3,810 | 8.6 | 254.0 | 12 | 98.7 | 4.5 | 2.7 | 29 | 201 | |
| 10 | | C. Kaepernick | 19 | 2014 | 16 | 289 | 478 | 60.5 | 3,369 | 7.0 | 210.6 | 10 | 86.4 | 4.0 | 2.1 | 52 | 344 | |
| 11 |  | A. Smith | 18 | 2009 | 11 | 225 | 372 | 60.5 | 2,350 | 6.3 | 213.6 | 12 | 81.5 | 4.8 | 3.2 | 22 | 134 | |
| 12 | | J. Garcia | 18 | 2003 | 13 | 225 | 392 | 57.4 | 2,704 | 6.9 | 208.0 | 13 | 80.1 | 4.6 | 3.3 | 21 | 104 | |
| 13 | | A. Smith | 17 | 2011 | 16 | 273 | 445 | 61.3 | 3,144 | 7.1 | 196.5 | 5 | 90.7 | 3.8 | 1.1 | 44 | 263 | |
| 14 | | J. Garoppolo | 16 | 2022 | 11 | 207 | 308 | 67.2 | 2,437 | 7.9 | 221.5 | 4 | 103.0 | 5.2 | 1.3 | 18 | 100 | |
| 15 | | C. Kaepernick | 16 | 2016 | 12 | 196 | 331 | 59.2 | 2,241 | 6.8 | 186.8 | 4 | 90.7 | 4.8 | 1.2 | 36 | 207 | |
| 16 | | A. Smith | 16 | 2006 | 16 | 257 | 442 | 58.1 | 2,890 | 6.5 | 180.6 | 16 | 74.8 | 3.6 | 3.6 | 35 | 202 | |
| 17 | | A. Smith | 14 | 2010 | 11 | 204 | 342 | 59.6 | 2,370 | 6.9 | 215.5 | 10 | 82.1 | 4.1 | 2.9 | 25 | 140 | |
| 18 |  | M. Jones | 13 | 2025 | 11 | 201 | 289 | 69.6 | 2,151 | 7.4 | 195.5 | 6 | 97.4 | 4.5 | 2.1 | 16 | 108 | |
| 19 | | B. Purdy | 13 | 2022 | 9 | 114 | 170 | 67.1 | 1,374 | 8.1 | 152.7 | 4 | 107.3 | 7.6 | 2.4 | 11 | 84 | |
| 20 | | N. Mullens | 13 | 2018 | 8 | 176 | 274 | 64.2 | 2,277 | 8.3 | 284.6 | 10 | 90.8 | 4.7 | 3.6 | 17 | 127 | |
| 21 | | A. Smith | 13 | 2012 | 10 | 153 | 218 | 70.2 | 1,737 | 8.0 | 173.7 | 5 | 104.1 | 6.0 | 2.3 | 24 | 137 | |
| 22 | | S. Hill | 13 | 2008 | 9 | 181 | 288 | 62.8 | 2,046 | 7.1 | 227.3 | 8 | 87.5 | 4.5 | 2.8 | 23 | 148 | |
| 23 | | N. Mullens | 12 | 2020 | 10 | 211 | 326 | 64.7 | 2,437 | 7.5 | 243.7 | 12 | 84.1 | 3.7 | 3.7 | 19 | 139 | |
| 24 | | B. Gabbert | 10 | 2015 | 8 | 178 | 282 | 63.1 | 2,031 | 7.2 | 253.9 | 7 | 86.2 | 3.5 | 2.5 | 25 | 164 | |
| 25 | | C. Kaepernick | 10 | 2012 | 13 | 136 | 218 | 62.4 | 1,814 | 8.3 | 139.5 | 3 | 98.3 | 4.6 | 1.4 | 16 | 112 | |
StatMuse has season-level data for passing touchdowns going back to the 1921 season.
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More 49ers Stats
Team Leaders 
PASS
2,167
Purdy
RUSH
1,202
McCaffrey
REC
924
McCaffrey
Team Rankings
PPG
25.7
10th
OPP PPG
21.8
13th
RUSH YDS/G
106.9
24th
PASS YDS/G
254.0
6th
NFL 2025 Leaders
NFL 2025 Rankings
NFL Fantasy 2025
NFL 2025 Betting
NFL 2025 Standings
| AFC East | W | L | T | PCT |
|---|---|---|---|---|
 Patriots - y | 14 | 3 | 0 | .824 |
 Bills - w | 12 | 5 | 0 | .706 |
 Dolphins - e | 7 | 10 | 0 | .412 |
 Jets - e | 3 | 14 | 0 | .176 |
| AFC North | W | L | T | PCT |
 Steelers - y | 10 | 7 | 0 | .588 |
 Ravens - e | 8 | 9 | 0 | .471 |
 Bengals - e | 6 | 11 | 0 | .353 |
 Browns - e | 5 | 12 | 0 | .294 |
| AFC South | W | L | T | PCT |
 Jaguars - y | 13 | 4 | 0 | .765 |
 Texans - w | 12 | 5 | 0 | .706 |
 Colts - e | 8 | 9 | 0 | .471 |
 Titans - e | 3 | 14 | 0 | .176 |
| AFC West | W | L | T | PCT |
 Broncos - z* | 14 | 3 | 0 | .824 |
 Chargers - w | 11 | 6 | 0 | .647 |
 Chiefs - e | 6 | 11 | 0 | .353 |
 Raiders - e | 3 | 14 | 0 | .176 |
| NFC East | W | L | T | PCT |
|---|---|---|---|---|
 Eagles - y | 11 | 6 | 0 | .647 |
 Cowboys - e | 7 | 9 | 1 | .441 |
 Commanders - e | 5 | 12 | 0 | .294 |
 Giants - e | 4 | 13 | 0 | .235 |
| NFC North | W | L | T | PCT |
 Bears - y | 11 | 6 | 0 | .647 |
 Packers - w | 9 | 7 | 1 | .559 |
 Vikings - e | 9 | 8 | 0 | .529 |
 Lions - e | 9 | 8 | 0 | .529 |
| NFC South | W | L | T | PCT |
 Panthers - y | 8 | 9 | 0 | .471 |
 Buccaneers - e | 8 | 9 | 0 | .471 |
 Falcons - e | 8 | 9 | 0 | .471 |
 Saints - e | 6 | 11 | 0 | .353 |
| NFC West | W | L | T | PCT |
 Seahawks - z* | 14 | 3 | 0 | .824 |
 Rams - w | 12 | 5 | 0 | .706 |
 49ers - w | 12 | 5 | 0 | .706 |
 Cardinals - e | 3 | 14 | 0 | .176 |