Between the 1999 and 2010 seasons, Peyton Manning had the most passing touchdowns, with 373 touchdowns.

Interpreted as:

most pass touchdowns by a player 1999 to 2010

	NAME	TD	GP	CMP	ATT	PCT	YDS	AVG	YDS/G	INT	RTG	TD%	INT%	SCK	SCKY
1	Peyton Manning P. Manning	373	192	4,356	6,635	65.7	51,089	7.7	266.1	170	96.9	5.6	2.6	209	1,374
2	Brett Favre B. Favre	295	189	3,982	6,413	62.1	45,035	7.0	238.3	218	84.3	4.6	3.4	293	2,024
3	Tom Brady T. Brady	261	145	2,996	4,710	63.6	34,744	7.4	239.6	103	95.2	5.5	2.2	244	1,539
4	Drew Brees D. Brees	235	138	3,145	4,822	65.2	35,266	7.3	255.6	132	91.7	4.9	2.7	184	1,350
5	Donovan McNabb D. McNabb	230	161	3,076	5,218	58.9	36,250	6.9	225.2	115	85.7	4.4	2.2	394	2,513
6	Kurt Warner K. Warner	208	123	2,662	4,059	65.6	32,305	8.0	262.6	128	93.8	5.1	3.2	260	1,669
7	Matt Hasselbeck M. Hasselbeck	176	170	2,572	4,279	60.1	29,579	6.9	174.0	128	82.2	4.1	3.0	309	1,896
8	Jeff Garcia J. Garcia	161	125	2,264	3,676	61.6	25,537	6.9	204.3	83	87.5	4.4	2.3	181	947
9	Jon Kitna J. Kitna	160	129	2,542	4,215	60.3	28,110	6.7	217.9	153	77.7	3.8	3.6	309	1,905
10	Eli Manning E. Manning	156	105	1,932	3,332	58.0	22,646	6.8	215.7	113	80.2	4.7	3.4	166	1,177
11	Kerry Collins K. Collins	155	143	2,651	4,632	57.2	30,933	6.7	216.3	131	77.0	3.3	2.8	232	1,535
12	Carson Palmer C. Palmer	154	97	2,024	3,217	62.9	22,694	7.1	234.0	100	86.9	4.8	3.1	160	1,116
13	Daunte Culpepper D. Culpepper	149	105	2,016	3,199	63.0	24,153	7.6	230.0	106	87.8	4.7	3.3	298	1,696
14	Ben Roethlisberger B. Roethlisberger	144	99	1,766	2,800	63.1	22,502	8.0	227.3	86	92.5	5.1	3.1	274	1,821
15	Trent Green T. Green	139	104	1,988	3,230	61.5	25,034	7.8	240.7	103	86.7	4.3	3.2	210	1,283
16	Philip Rivers P. Rivers	136	84	1,564	2,455	63.7	19,661	8.0	234.1	58	97.2	5.5	2.4	141	878
17	Steve McNair S. McNair	136	116	2,099	3,414	61.5	23,645	6.9	203.8	91	84.3	4.0	2.7	175	1,093
18	Jake Plummer J. Plummer	129	117	2,003	3,507	57.1	23,313	6.6	199.3	126	74.7	3.7	3.6	183	1,164
19	Jake Delhomme J. Delhomme	125	102	1,723	2,904	59.3	20,764	7.2	203.6	101	81.2	4.3	3.5	166	1,249
20	Aaron Brooks A. Brooks	123	93	1,673	2,963	56.5	20,261	6.8	217.9	92	78.5	4.2	3.1	235	1,454
21	Drew Bledsoe D. Bledsoe	123	104	1,952	3,335	58.5	22,630	6.8	217.6	104	78.4	3.7	3.1	310	1,984
22	Marc Bulger M. Bulger	122	96	1,969	3,171	62.1	22,814	7.2	237.6	93	84.4	3.8	2.9	254	1,863
23	Brad Johnson B. Johnson	122	139	2,086	3,389	61.6	22,591	6.7	162.5	93	81.7	3.6	2.7	203	1,280
24	Brian Griese B. Griese	119	92	1,751	2,793	62.7	19,438	7.0	211.3	98	82.9	4.3	3.5	193	1,326
25	Tony Romo T. Romo	118	89	1,326	2,070	64.1	16,650	8.0	187.1	62	95.5	5.7	3.0	106	660

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StatMuse has season-level data for passing touchdowns going back to the 1921 season.

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Interpreted as:

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