Between the 2000 and 2009 seasons, Peyton Manning had the most passing touchdowns, with 314 touchdowns.

Interpreted as:

most passing tds by a player in the 2000s

	NAME	TD	GP	CMP	ATT	PCT	YDS	AVG	YDS/G	INT	RTG	TD%	INT%	SCK	SCKY
1	Peyton Manning P. Manning	314	160	3,575	5,423	65.9	42,254	7.8	264.1	138	98.2	5.8	2.5	179	1,167
2	Brett Favre B. Favre	262	160	3,424	5,460	62.7	38,435	7.0	240.2	176	86.2	4.8	3.2	236	1,662
3	Tom Brady T. Brady	225	129	2,672	4,218	63.3	30,844	7.3	239.1	99	93.3	5.3	2.3	219	1,364
4	Donovan McNabb D. McNabb	208	136	2,695	4,530	59.5	31,925	7.0	234.7	93	87.8	4.6	2.1	329	2,038
5	Drew Brees D. Brees	202	122	2,697	4,164	64.8	30,646	7.4	251.2	110	91.9	4.9	2.6	159	1,165
6	Kurt Warner K. Warner	167	107	2,337	3,560	65.6	27,952	7.9	261.2	115	91.7	4.7	3.2	231	1,468
7	Matt Hasselbeck M. Hasselbeck	163	140	2,303	3,825	60.2	26,537	6.9	189.6	111	83.3	4.3	2.9	279	1,712
8	Jeff Garcia J. Garcia	150	112	2,039	3,301	61.8	22,993	7.0	205.3	72	88.6	4.5	2.2	166	843
9	Daunte Culpepper D. Culpepper	149	104	2,016	3,199	63.0	24,153	7.6	232.2	106	87.8	4.7	3.3	298	1,696
10	Trent Green T. Green	139	104	1,988	3,230	61.5	25,034	7.8	240.7	103	86.7	4.3	3.2	210	1,283
11	Kerry Collins K. Collins	133	123	2,301	4,023	57.2	26,792	6.7	217.8	112	76.9	3.3	2.8	203	1,332
12	Carson Palmer C. Palmer	128	81	1,662	2,631	63.2	18,724	7.1	231.2	80	87.9	4.9	3.0	134	915
13	Ben Roethlisberger B. Roethlisberger	127	87	1,526	2,411	63.3	19,302	8.0	221.9	81	91.7	5.3	3.4	242	1,601
14	Eli Manning E. Manning	125	89	1,593	2,793	57.0	18,644	6.7	209.5	88	79.2	4.5	3.2	150	1,060
15	Steve McNair S. McNair	124	105	1,912	3,083	62.0	21,466	7.0	204.4	83	85.0	4.0	2.7	159	1,019
16	Aaron Brooks A. Brooks	123	93	1,673	2,963	56.5	20,261	6.8	217.9	92	78.5	4.2	3.1	235	1,454
17	Marc Bulger M. Bulger	122	96	1,969	3,171	62.1	22,814	7.2	237.6	93	84.4	3.8	2.9	254	1,863
18	Jon Kitna J. Kitna	121	104	2,063	3,402	60.6	22,399	6.6	215.4	125	76.6	3.6	3.7	256	1,607
19	Jake Delhomme J. Delhomme	120	95	1,588	2,679	59.3	19,371	7.2	203.9	89	82.7	4.5	3.3	154	1,158
20	Jake Plummer J. Plummer	120	105	1,802	3,126	57.6	21,202	6.8	201.9	102	77.6	3.8	3.3	156	1,012
21	Tony Romo T. Romo	107	83	1,178	1,857	63.4	15,045	8.1	181.3	55	95.6	5.8	3.0	99	619
22	Philip Rivers P. Rivers	106	68	1,207	1,914	63.1	14,951	7.8	219.9	45	95.8	5.5	2.4	103	651
23	Brian Griese B. Griese	105	78	1,490	2,341	63.6	16,406	7.0	210.3	84	84.3	4.5	3.6	166	1,150
24	Drew Bledsoe D. Bledsoe	104	88	1,647	2,796	58.9	18,645	6.7	211.9	83	79.0	3.7	3.0	255	1,642
25	Chad Pennington C. Pennington	102	88	1,631	2,469	66.1	17,804	7.2	202.3	64	90.1	4.1	2.6	162	965

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StatMuse has season-level data for passing touchdowns going back to the 1921 season.

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Patriots - y	14	3	0	.824
Bills - w	12	5	0	.706
Dolphins - e	7	10	0	.412
Jets - e	3	14	0	.176
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Ravens - e	8	9	0	.471
Bengals - e	6	11	0	.353
Browns - e	5	12	0	.294
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Jaguars - y	13	4	0	.765
Texans - w	12	5	0	.706
Colts - e	8	9	0	.471
Titans - e	3	14	0	.176
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Chargers - w	11	6	0	.647
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Commanders - e	5	12	0	.294
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Vikings - e	9	8	0	.529
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Buccaneers - e	8	9	0	.471
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Seahawks - z*	14	3	0	.824
Rams - w	12	5	0	.706
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