Joe Montana has the most career passing touchdowns for the 49ers, with 244 touchdowns.

most passing touchdowns player san francisco 49ers all-time
MontanaYoungBrodieGarciaTittleSmithKaepernickGaroppoloDeBergSpurrierAlbertMullensRattayHillPlunkettBeathardGrbacMiraGabbertBonoKempOwenSnead244221214113108817251373327252423221818171614111111
NAMEGPTDCMPATTPCTYDSAVGYDS/GTD%INTINT%SCKSCKYRATE
Joe MontanaJoe Montana1672442,9294,60063.735,1247.6210.35.31232.72821,90293.5
Steve YoungSteve Young1502212,4003,64865.829,9078.2199.46.1862.42901,571101.4
John BrodieJohn Brodie2012142,4694,49155.031,5487.0157.04.82245.04738072.3
Jeff GarciaJeff Garcia741131,4492,36061.416,4087.0221.74.8562.410357088.3
Y.A. TittleY.A. Tittle1121081,2262,19455.916,0167.3143.04.91346.170.0
Alex SmithAlex Smith80811,2902,17759.314,2806.6178.53.7632.91961,18279.1
Colin KaepernickColin Kaepernick69721,0111,69259.812,2717.3177.84.3301.81711,06088.9
Jimmy GaroppoloJimmy Garoppolo35516741,00167.38,2778.3236.55.1282.87450998.0
Steve DeBergSteve DeBerg39376701,20155.87,2206.0185.13.1605.04838963.1
Steve SpurrierSteve Spurrier923344184052.55,2506.357.13.9485.75036761.2
Frankie AlbertFrankie Albert362731660152.63,8476.4106.94.5437.257.7
Nick MullensNick Mullens192538760064.54,7147.9248.14.2223.73626687.2
Tim RattayTim Rattay322435658660.83,9416.7123.24.1183.15935481.6
Shaun HillShaun Hill182332252261.73,4906.7193.94.4112.14728687.3
Jim PlunkettJim Plunkett262225449151.73,2856.7126.34.5306.15649162.5
C.J. BeathardC.J. Beathard191829149758.63,4697.0182.63.6132.64636881.1
Elvis GrbacElvis Grbac421828443066.03,0987.273.84.2163.71610285.6
George MiraGeorge Mira471711224046.71,7117.136.47.1145.870.0
Blaine GabbertBlaine Gabbert151627244960.62,9946.7199.63.6132.93621280.2
Steve BonoSteve Bono341422035961.32,5587.175.23.971.91712387.7
Jeff KempJeff Kemp101111920059.51,5547.8155.45.584.085685.7
Tom OwenTom Owen141111223547.71,6457.0117.54.7177.23125956.4
Norm SneadNorm Snead121113823758.21,7057.2142.14.6114.61812476.7
J.T. O'SullivanJ.T. O'Sullivan9812822058.21,6787.6186.43.6115.03219773.6
Ken DorseyKen Dorsey11817131654.11,7125.4155.62.5113.51912263.7
StatMuse has season-level data for passing touchdowns going back to the 1921 season.

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