Deion Sanders and Ronnie Lott are tied for the most interception touchdowns for the 49ers in a season, scoring 3 touchdowns.
| NAME | INT TD | SEASON | TM | GP | TKL | AST | COMB | SCK | SCKY | INT | INT YDS | FF | FR | FR TD | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  | D. Sanders | 3 | 1994 |  SF | 14 | 0.0 | 6 | 303 | 1 | 0 | |||||
| 2 |  | R. Lott | 3 | 1981 | SF | 16 | 7 | 117 | 2 | 0 | ||||||
| 3 |  | Z. Bronson | 2 | 2001 | SF | 16 | 57 | 6 | 63 | 0.0 | 0 | 7 | 165 | 0 | 1 | 0 |
| 4 | | T. McDonald | 2 | 1995 | SF | 16 | 0.0 | 4 | 135 | 0 | 0 | |||||
| 5 | | K. Norton | 2 | 1995 | SF | 16 | 1.0 | 3 | 102 | 0 | 0 | |||||
| 6 | | T. Holmoe | 2 | 1986 | SF | 16 | 0.0 | 3 | 149 | 3 | 0 | |||||
| 7 | | D. Hicks | 2 | 1983 | SF | 15 | 0.0 | 2 | 102 | 2 | 0 | |||||
| 8 | | E. Wright | 2 | 1983 | SF | 16 | 0.0 | 7 | 164 | 1 | 0 | |||||
| 9 | | S. Vanderbundt | 2 | 1972 | SF | 14 | 2 | 58 | 3 | 1 | ||||||
| 10 | | F. Warner | 1 | 2024 | SF | 17 | 76 | 55 | 131 | 1.0 | 0 | 2 | 70 | 4 | 0 | 0 |
| 11 | | C. Ward | 1 | 2023 | SF | 17 | 56 | 16 | 72 | 0.0 | 0 | 5 | 91 | 1 | 0 | 0 |
| 12 | | E. Moseley | 1 | 2022 | SF | 5 | 18 | 4 | 22 | 0.0 | 0 | 1 | 41 | 0 | 0 | 0 |
| 13 | | T. Hufanga | 1 | 2022 | SF | 17 | 66 | 31 | 97 | 2.0 | 12 | 4 | 61 | 2 | 0 | 0 |
| 14 | | J. Ward | 1 | 2021 | SF | 16 | 51 | 26 | 77 | 0.0 | 0 | 2 | 27 | 0 | 0 | 0 |
| 15 | | D. Greenlaw | 1 | 2021 | SF | 3 | 10 | 11 | 21 | 0.0 | 0 | 1 | 39 | 0 | 0 | 0 |
| 16 | | J. Kinlaw | 1 | 2020 | SF | 14 | 15 | 18 | 33 | 1.5 | 7.5 | 1 | 27 | 0 | 0 | 0 |
| 17 |  | R. Sherman | 1 | 2019 | SF | 15 | 48 | 13 | 61 | 0.0 | 0 | 3 | 65 | 0 | 0 | 0 |
| 18 | | A. Witherspoon | 1 | 2019 | SF | 10 | 24 | 4 | 28 | 0.0 | 0 | 1 | 25 | 0 | 0 | 0 |
| 19 | | F. Warner | 1 | 2019 | SF | 16 | 89 | 29 | 118 | 3.0 | 31 | 1 | 46 | 3 | 0 | 0 |
| 20 | | A. Exum | 1 | 2018 | SF | 15 | 34 | 6 | 40 | 1.0 | 6 | 1 | 32 | 1 | 0 | 0 |
| 21 | | D. Johnson | 1 | 2017 | SF | 16 | 69 | 8 | 77 | 0.0 | 0 | 1 | 50 | 0 | 0 | 0 |
| 22 | | J. Ward | 1 | 2015 | SF | 16 | 48 | 9 | 57 | 1.0 | 9 | 1 | 29 | 0 | 0 | 0 |
| 23 | | A. Bethea | 1 | 2014 | SF | 16 | 72 | 14 | 86 | 1.0 | 5 | 4 | 71 | 1 | 0 | 0 |
| 24 | | D. Johnson | 1 | 2014 | SF | 16 | 26 | 8 | 34 | 0.0 | 0 | 1 | 20 | 0 | 0 | 0 |
| 25 |  | N. Bowman | 1 | 2013 | SF | 16 | 120 | 25 | 145 | 5.0 | 45 | 2 | 93 | 4 | 2 | 0 |
StatMuse has season-level data for interception touchdowns going back to the 1921 season.
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| NFC North | W | L | T | PCT |
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| NFC West | W | L | T | PCT |
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