Before 2004, Billy Kilmer scored the most rushing touchdowns by a rookie quarterback, with 10 touchdowns in 1961.
| NAME | RUSH TD | SEASON | TM | GP | RUSH YDS | ATT | YPC | RUSH YDS/G | REC YDS | REC | TRG | AVG | REC YDS/G | REC TD | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  | B. Kilmer | 10 | 1961 | 11 | 509 | 96 | 5.3 | 46.3 | 0 | 0 | 0.0 | 0 | |||
| 2 | | C. Weinke | 6 | 2001 | 15 | 128 | 37 | 3.5 | 8.5 | 0 | 0 | 0 | 0.0 | 0 | ||
| 3 | | J. Thompson | 5 | 1979 | 9 | 116 | 21 | 5.5 | 12.9 | 0 | 0 | 0.0 | 0 | |||
| 4 | | F. Tarkenton | 5 | 1961 | 14 | 308 | 56 | 5.5 | 22.0 | 0 | 0 | 0.0 | 0 | |||
| 5 | | B. Waterfield | 5 | 1945 | 10 | 18 | 18 | 1.0 | 1.8 | 0 | 0 | 0.0 | 0 | |||
| 6 | | R. Peete | 4 | 1989 | 8 | 148 | 33 | 4.5 | 18.5 | 0 | 0 | 0.0 | 0 | |||
| 7 | | P. Haden | 4 | 1976 | 10 | 84 | 25 | 3.4 | 8.4 | 0 | 0 | 0.0 | 0 | |||
| 8 | | J. Zorn | 4 | 1976 | 14 | 246 | 52 | 4.7 | 17.6 | 0 | 0 | 0.0 | 0 | |||
| 9 | | B. Sipe | 4 | 1974 | 10 | 44 | 16 | 2.8 | 4.4 | 0 | 0 | 0.0 | 0 | |||
| 10 | | S. Hunter | 4 | 1971 | 13 | 50 | 21 | 2.4 | 3.8 | 0 | 0 | 0.0 | 0 | |||
| 11 | | A. Manning | 4 | 1971 | 12 | 172 | 33 | 5.2 | 14.3 | -7 | 1 | -7.0 | -0.6 | 0 | ||
| 12 | | M. Domres | 4 | 1969 | 10 | 145 | 19 | 7.6 | 14.5 | 0 | 0 | 0.0 | 0 | |||
| 13 | | V. Carter | 4 | 1968 | 7 | 265 | 48 | 5.5 | 37.9 | 0 | 0 | 0.0 | 0 | |||
| 14 | | R. Johnson | 4 | 1966 | 14 | 142 | 35 | 4.1 | 10.1 | 0 | 0 | 0.0 | 0 | |||
| 15 | | G. Gulyanics | 4 | 1947 | 12 | 212 | 35 | 6.1 | 17.7 | 22 | 3 | 7.3 | 1.8 | 0 | ||
| 16 | | B. Shepherd | 4 | 1935 | TOT | 12 | 425 | 143 | 3.0 | 35.4 | 33 | 4 | 8.3 | 2.8 | 0 | |
| 17 | | D. Carr | 3 | 2002 | 16 | 282 | 59 | 4.8 | 17.6 | 0 | 0 | 0 | 0.0 | 0 | ||
| 18 | | K. Collins | 3 | 1995 | 15 | 74 | 42 | 1.8 | 4.9 | 0 | 0 | 0.0 | 0 | |||
| 19 | | R. Mirer | 3 | 1993 | 16 | 343 | 68 | 5.0 | 21.4 | 0 | 0 | 0.0 | 0 | |||
| 20 | | C. Chandler | 3 | 1988 | 15 | 139 | 46 | 3.0 | 9.3 | 0 | 0 | 0.0 | 0 | |||
| 21 | | D. Woodley | 3 | 1980 | 13 | 214 | 55 | 3.9 | 16.5 | 0 | 0 | 0.0 | 0 | |||
| 22 | | S. Grogan | 3 | 1975 | 13 | 110 | 30 | 3.7 | 8.5 | 0 | 0 | 0.0 | 0 | |||
| 23 | | B. Dowling | 3 | 1972 | 14 | 35 | 7 | 5.0 | 2.5 | 0 | 0 | 0.0 | 0 | |||
| 24 | | D. Pastorini | 3 | 1971 | 14 | 140 | 26 | 5.4 | 10.0 | 0 | 0 | 0.0 | 0 | |||
| 25 | | M. Briscoe | 3 | 1968 | 11 | 308 | 41 | 7.5 | 28.0 | 0 | 0 | 0.0 | 0 | |||
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HOUStatMuse has season-level data for rushing touchdowns going back to the 1921 season.
More 49ers Stats
Team Leaders 
PASS
2,151
Jones
RUSH
922
McCaffrey
REC
820
McCaffrey
Team Rankings
PPG
24.6
10th
OPP PPG
20.9
11th
RUSH YDS/G
101.4
26th
PASS YDS/G
256.6
6th
NFL 2025 Leaders
NFL 2025 Rankings
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NFL 2025 Betting
NFL 2025 Standings
| AFC East | W | L | T | PCT |
|---|---|---|---|---|
 Patriots - x | 12 | 3 | 0 | .800 |
11 | 4 | 0 | .733 | |
 Dolphins - e | 6 | 9 | 0 | .400 |
 Jets - e | 3 | 12 | 0 | .200 |
| AFC North | W | L | T | PCT |
9 | 6 | 0 | .600 | |
7 | 8 | 0 | .467 | |
 Bengals - e | 5 | 10 | 0 | .333 |
 Browns - e | 3 | 12 | 0 | .200 |
| AFC South | W | L | T | PCT |
11 | 4 | 0 | .733 | |
10 | 5 | 0 | .667 | |
8 | 6 | 0 | .571 | |
 Titans - e | 3 | 12 | 0 | .200 |
| AFC West | W | L | T | PCT |
 Broncos - x | 12 | 3 | 0 | .800 |
11 | 4 | 0 | .733 | |
 Chiefs - e | 6 | 9 | 0 | .400 |
 Raiders - e | 2 | 13 | 0 | .133 |
Bills
Steelers
Ravens
Jaguars| NFC East | W | L | T | PCT |
|---|---|---|---|---|
 Eagles - y | 10 | 5 | 0 | .667 |
 Cowboys - e | 6 | 8 | 1 | .433 |
 Commanders - e | 4 | 11 | 0 | .267 |
 Giants - e | 2 | 13 | 0 | .133 |
| NFC North | W | L | T | PCT |
 Bears - x | 11 | 4 | 0 | .733 |
9 | 5 | 1 | .633 | |
8 | 7 | 0 | .533 | |
 Vikings - e | 7 | 8 | 0 | .467 |
| NFC South | W | L | T | PCT |
8 | 7 | 0 | .533 | |
7 | 8 | 0 | .467 | |
 Falcons - e | 6 | 9 | 0 | .400 |
 Saints - e | 5 | 10 | 0 | .333 |
| NFC West | W | L | T | PCT |
 Seahawks - x | 12 | 3 | 0 | .800 |
 Rams - x | 11 | 4 | 0 | .733 |
 49ers - x | 10 | 4 | 0 | .714 |
 Cardinals - e | 3 | 12 | 0 | .200 |
Buccaneers
