Brock Purdy and Nick Mullens are tied for the most passing touchdowns by a 49ers rookie, with 13 touchdowns.
| NAME | TD | SEASON | TM | GP | CMP | ATT | PCT | YDS | AVG | YDS/G | INT | RTG | TD% | INT% | SCK | SCKY | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  | B. Purdy | 13 | 2022 |  SF | 9 | 114 | 170 | 67.1 | 1,374 | 8.1 | 152.7 | 4 | 107.3 | 7.6 | 2.4 | 11 | 84 |
| 2 |  | N. Mullens | 13 | 2018 | SF | 8 | 176 | 274 | 64.2 | 2,277 | 8.3 | 284.6 | 10 | 90.8 | 4.7 | 3.6 | 17 | 127 |
| 3 | | J. Garcia | 11 | 1999 | SF | 13 | 225 | 375 | 60.0 | 2,544 | 6.8 | 195.7 | 11 | 77.9 | 2.9 | 2.9 | 15 | 104 |
| 4 | | T. Owen | 10 | 1974 | SF | 10 | 88 | 184 | 47.8 | 1,327 | 7.2 | 132.7 | 15 | 56.1 | 5.4 | 8.2 | 25 | 202 |
| 5 | | S. DeBerg | 8 | 1978 | SF | 12 | 137 | 302 | 45.4 | 1,570 | 5.2 | 130.8 | 22 | 40.0 | 2.6 | 7.3 | 17 | 156 |
| 6 | | K. Dorsey | 6 | 2004 | SF | 8 | 123 | 226 | 54.4 | 1,231 | 5.4 | 153.9 | 9 | 62.4 | 2.7 | 4.0 | 13 | 94 |
| 7 |  | T. Lance | 5 | 2021 | SF | 6 | 41 | 71 | 57.7 | 603 | 8.5 | 100.5 | 2 | 97.3 | 7.0 | 2.8 | 4 | 15 |
| 8 |  | C.J. Beathard | 4 | 2017 | SF | 7 | 123 | 224 | 54.9 | 1,430 | 6.4 | 204.3 | 6 | 69.2 | 1.8 | 2.7 | 19 | 141 |
| 9 | | E. Grbac | 2 | 1994 | SF | 11 | 35 | 50 | 70.0 | 393 | 7.9 | 35.7 | 1 | 98.2 | 4.0 | 2.0 | 4 | 36 |
| 10 | | S. Bull | 2 | 1976 | SF | 14 | 21 | 48 | 43.8 | 252 | 5.3 | 18.0 | 4 | 39.6 | 4.2 | 8.3 | 5 | 44 |
| 11 | | G. Mira | 2 | 1964 | SF | 7 | 23 | 53 | 43.4 | 331 | 6.2 | 47.3 | 5 | 37.5 | 3.8 | 9.4 | ||
| 12 | | J. Brodie | 2 | 1957 | SF | 5 | 11 | 21 | 52.4 | 160 | 7.6 | 32.0 | 3 | 69.6 | 9.5 | 14.3 | ||
| 13 |  | A. Smith | 1 | 2005 | SF | 9 | 84 | 165 | 50.9 | 875 | 5.3 | 97.2 | 11 | 40.8 | 0.6 | 6.7 | 29 | 185 |
| 14 | | J. Druckenmiller | 1 | 1997 | SF | 4 | 21 | 52 | 40.4 | 239 | 4.6 | 59.8 | 4 | 29.2 | 1.9 | 7.7 | 4 | 32 |
| 15 | | J. Brohm | 1 | 1996 | SF | 3 | 21 | 34 | 61.8 | 189 | 5.6 | 63.0 | 0 | 86.5 | 2.9 | 0.0 | 2 | 10 |
| 16 | | B. Musgrave | 1 | 1991 | SF | 1 | 4 | 5 | 80.0 | 33 | 6.6 | 33.0 | 0 | 133.8 | 20.0 | 0.0 | 0 | 0 |
| 17 | | M. Stevens | 1 | 1987 | SF | 2 | 2 | 4 | 50.0 | 52 | 13.0 | 26.0 | 0 | 135.4 | 25.0 | 0.0 | 0 | 0 |
| 18 | | H. Sydney | 1 | 1987 | SF | 14 | 1 | 1 | 100.0 | 50 | 50.0 | 3.6 | 0 | 158.3 | 100.0 | 0.0 | 0 | 0 |
| 19 |  | J. Montana | 1 | 1979 | SF | 16 | 13 | 23 | 56.5 | 96 | 4.2 | 6.0 | 0 | 81.1 | 4.3 | 0.0 | 0 | 0 |
| 20 | | D. Morrison | 1 | 1974 | SF | 3 | 21 | 51 | 41.2 | 227 | 4.5 | 75.7 | 5 | 21.9 | 2.0 | 9.8 | 0 | 0 |
| 21 | | D. Lisbon | 1 | 1963 | SF | 14 | 1 | 2 | 50.0 | 45 | 22.5 | 3.2 | 0 | 135.4 | 50.0 | 0.0 | ||
| 22 | | B. Waters | 1 | 1960 | SF | 8 | 2 | 2 | 100.0 | 61 | 30.5 | 7.6 | 0 | 158.3 | 50.0 | 0.0 | ||
| 23 | | E. Morrall | 1 | 1956 | SF | 12 | 38 | 78 | 48.7 | 621 | 8.0 | 51.8 | 6 | 48.1 | 1.3 | 7.7 | ||
| 24 | | J. Henry Johnson | 1 | 1954 | SF | 12 | 1 | 2 | 50.0 | 10 | 5.0 | 0.8 | 0 | 104.2 | 50.0 | 0.0 |
StatMuse has season-level data for passing touchdowns going back to the 1921 season.
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| NFC North | W | L | T | PCT |
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